{"num_pairs":13,"pairs":[{"index":1,"nt1":"|1|A|U|2647||||","nt2":"|1|A|G|2673||||","bp":"U-G","name":"--","Saenger":"--","LW":"cWW","DSSR":"cW-W"},{"index":2,"nt1":"|1|A|G|2648||||","nt2":"|1|A|U|2672||||","bp":"G-U","name":"Wobble","Saenger":"28-XXVIII","LW":"cWW","DSSR":"cW-W"},{"index":3,"nt1":"|1|A|C|2649||||","nt2":"|1|A|G|2671||||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":4,"nt1":"|1|A|U|2650||||","nt2":"|1|A|A|2670||||","bp":"U-A","name":"WC","Saenger":"20-XX","LW":"cWW","DSSR":"cW-W"},{"index":5,"nt1":"|1|A|C|2651||||","nt2":"|1|A|G|2669||A||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":6,"nt1":"|1|A|C|2652||||","nt2":"|1|A|G|2668||||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":7,"nt1":"|1|A|U|2653||||","nt2":"|1|A|C|2667||||","bp":"U-C","name":"--","Saenger":"--","LW":"tW.","DSSR":"tW-."},{"index":8,"nt1":"|1|A|A|2654||||","nt2":"|1|A|C|2666||||","bp":"A+C","name":"--","Saenger":"--","LW":"tHH","DSSR":"tM+M"},{"index":9,"nt1":"|1|A|G|2655||||","nt2":"|1|A|U|2656||||","bp":"G+U","name":"Platform","Saenger":"--","LW":"cSH","DSSR":"cm+M"},{"index":10,"nt1":"|1|A|U|2656||||","nt2":"|1|A|A|2665||||","bp":"U-A","name":"rHoogsteen","Saenger":"24-XXIV","LW":"tWH","DSSR":"tW-M"},{"index":11,"nt1":"|1|A|A|2657||||","nt2":"|1|A|G|2664||||","bp":"A-G","name":"Sheared","Saenger":"11-XI","LW":"tHS","DSSR":"tM-m"},{"index":12,"nt1":"|1|A|C|2658||||","nt2":"|1|A|G|2663||A||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":13,"nt1":"|1|A|G|2659||||","nt2":"|1|A|A|2662||||","bp":"G-A","name":"Sheared","Saenger":"11-XI","LW":"tSH","DSSR":"tm-M"}],"num_multiplets":1,"multiplets":[{"index":1,"num_nts":3,"nts_short":"GUA","nts_long":"|1|A|G|2655||||,|1|A|U|2656||||,|1|A|A|2665||||","planarity":0.234}],"num_helices":1,"helices":[{"index":1,"num_stems":1,"strand1":"UGCUCCUAUACG","strand2":"GUGAGGCCAGGA","bp_type":".|||||....|.","helix_form":"..AAA..x...","num_pairs":12,"pairs":[{"index":1,"nt1":"|1|A|U|2647||||","nt2":"|1|A|G|2673||||","bp":"U-G","name":"--","Saenger":"--","LW":"cWW","DSSR":"cW-W"},{"index":2,"nt1":"|1|A|G|2648||||","nt2":"|1|A|U|2672||||","bp":"G-U","name":"Wobble","Saenger":"28-XXVIII","LW":"cWW","DSSR":"cW-W"},{"index":3,"nt1":"|1|A|C|2649||||","nt2":"|1|A|G|2671||||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":4,"nt1":"|1|A|U|2650||||","nt2":"|1|A|A|2670||||","bp":"U-A","name":"WC","Saenger":"20-XX","LW":"cWW","DSSR":"cW-W"},{"index":5,"nt1":"|1|A|C|2651||||","nt2":"|1|A|G|2669||A||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":6,"nt1":"|1|A|C|2652||||","nt2":"|1|A|G|2668||||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":7,"nt1":"|1|A|U|2653||||","nt2":"|1|A|C|2667||||","bp":"U-C","name":"--","Saenger":"--","LW":"tW.","DSSR":"tW-."},{"index":8,"nt1":"|1|A|A|2654||||","nt2":"|1|A|C|2666||||","bp":"A+C","name":"--","Saenger":"--","LW":"tHH","DSSR":"tM+M"},{"index":9,"nt1":"|1|A|U|2656||||","nt2":"|1|A|A|2665||||","bp":"U-A","name":"rHoogsteen","Saenger":"24-XXIV","LW":"tWH","DSSR":"tW-M"},{"index":10,"nt1":"|1|A|A|2657||||","nt2":"|1|A|G|2664||||","bp":"A-G","name":"Sheared","Saenger":"11-XI","LW":"tHS","DSSR":"tM-m"},{"index":11,"nt1":"|1|A|C|2658||||","nt2":"|1|A|G|2663||A||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":12,"nt1":"|1|A|G|2659||||","nt2":"|1|A|A|2662||||","bp":"G-A","name":"Sheared","Saenger":"11-XI","LW":"tSH","DSSR":"tm-M"}]}],"num_stems":1,"stems":[{"index":1,"helix_index":1,"strand1":"GCUCC","strand2":"UGAGG","bp_type":"|||||","helix_form":".AAA","num_pairs":5,"pairs":[{"index":1,"nt1":"|1|A|G|2648||||","nt2":"|1|A|U|2672||||","bp":"G-U","name":"Wobble","Saenger":"28-XXVIII","LW":"cWW","DSSR":"cW-W"},{"index":2,"nt1":"|1|A|C|2649||||","nt2":"|1|A|G|2671||||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":3,"nt1":"|1|A|U|2650||||","nt2":"|1|A|A|2670||||","bp":"U-A","name":"WC","Saenger":"20-XX","LW":"cWW","DSSR":"cW-W"},{"index":4,"nt1":"|1|A|C|2651||||","nt2":"|1|A|G|2669||A||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"},{"index":5,"nt1":"|1|A|C|2652||||","nt2":"|1|A|G|2668||||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"}]}],"num_isoCanonPairs":1,"isoCanonPairs":[{"index":-1,"helix_index":1,"nt1":"|1|A|C|2658||||","nt2":"|1|A|G|2663||A||","bp":"C-G","name":"WC","Saenger":"19-XIX","LW":"cWW","DSSR":"cW-W"}],"num_stacks":5,"stacks":[{"index":1,"num_nts":2,"nts_short":"GG","nts_long":"|1|A|G|2648||||,|1|A|G|2673||||"},{"index":2,"num_nts":3,"nts_short":"UAA","nts_long":"|1|A|U|2660||||,|1|A|A|2661||||,|1|A|A|2662||||"},{"index":3,"num_nts":4,"nts_short":"CUAU","nts_long":"|1|A|C|2652||||,|1|A|U|2653||||,|1|A|A|2654||||,|1|A|U|2656||||"},{"index":4,"num_nts":4,"nts_short":"GGGG","nts_long":"|1|A|G|2655||||,|1|A|G|2664||||,|1|A|G|2663||A||,|1|A|G|2659||||"},{"index":5,"num_nts":6,"nts_short":"CAACCG","nts_long":"|1|A|C|2658||||,|1|A|A|2657||||,|1|A|A|2665||||,|1|A|C|2666||||,|1|A|C|2667||||,|1|A|G|2668||||"}],"num_atom2bases":2,"atom2bases":[{"index":1,"type":"phosphate","atom":"|1|A|A|2661|OP2|||","nt":"|1|A|G|2659||||","vert_dist":3.043},{"index":2,"type":"sugar","atom":"|1|A|G|2664|O4'|||","nt":"|1|A|G|2663||A||","vert_dist":3.478}],"num_hairpins":1,"hairpins":[{"index":1,"type":"hairpin loop","bridging_nts":[4],"stem_indices":[-1],"summary":"[1] 4 [A.2658 A.2663] 1","num_nts":6,"nts_short":"CGUAAG","nts_long":"|1|A|C|2658||||,|1|A|G|2659||||,|1|A|U|2660||||,|1|A|A|2661||||,|1|A|A|2662||||,|1|A|G|2663||A||","num_stems":1,"bridges":[{"index":1,"num_nts":4,"nts_short":"GUAA","nts_long":"|1|A|G|2659||||,|1|A|U|2660||||,|1|A|A|2661||||,|1|A|A|2662||||"}]}],"num_iloops":1,"iloops":[{"index":1,"type":"asymmetric internal loop","bridging_nts":[5,4],"stem_indices":[1,-1],"summary":"[2] 5 4 [A.2652 A.2668 A.2658 A.2663] 5 1","num_nts":13,"nts_short":"CUAGUACGGACCG","nts_long":"|1|A|C|2652||||,|1|A|U|2653||||,|1|A|A|2654||||,|1|A|G|2655||||,|1|A|U|2656||||,|1|A|A|2657||||,|1|A|C|2658||||,|1|A|G|2663||A||,|1|A|G|2664||||,|1|A|A|2665||||,|1|A|C|2666||||,|1|A|C|2667||||,|1|A|G|2668||||","num_stems":2,"bridges":[{"index":1,"num_nts":5,"nts_short":"UAGUA","nts_long":"|1|A|U|2653||||,|1|A|A|2654||||,|1|A|G|2655||||,|1|A|U|2656||||,|1|A|A|2657||||"},{"index":2,"num_nts":4,"nts_short":"GACC","nts_long":"|1|A|G|2664||||,|1|A|A|2665||||,|1|A|C|2666||||,|1|A|C|2667||||"}]}],"num_ssSegments":2,"ssSegments":[{"index":1,"num_nts":1,"nts_short":"U","nts_long":"|1|A|U|2647||||"},{"index":2,"num_nts":1,"nts_short":"G","nts_long":"|1|A|G|2673||||"}],"num_splayUnits":1,"splayUnits":[{"index":1,"num_nts":2,"nts_short":"GU","nts_long":"|1|A|G|2659||||,|1|A|U|2660||||"}],"ct":["   27","    1 U     0     2     0  2647","    2 G     1     3    26  2648","    3 C     2     4    25  2649","    4 U     3     5    24  2650","    5 C     4     6    23  2651","    6 C     5     7    22  2652","    7 U     6     8     0  2653","    8 A     7     9     0  2654","    9 G     8    10     0  2655","   10 U     9    11     0  2656","   11 A    10    12     0  2657","   12 C    11    13    17  2658","   13 G    12    14     0  2659","   14 U    13    15     0  2660","   15 A    14    16     0  2661","   16 A    15    17     0  2662","   17 G    16    18    12  2663","   18 G    17    19     0  2664","   19 A    18    20     0  2665","   20 C    19    21     0  2666","   21 C    20    22     0  2667","   22 G    21    23     6  2668","   23 G    22    24     5  2669","   24 A    23    25     4  2670","   25 G    24    26     3  2671","   26 U    25    27     2  2672","   27 G    26     0     0  2673"],"dbn":{"all_chains":{"num_nts":27,"num_chars":27,"bseq":"UGCUCCUAGUACGUAAGGACCGGAGUG","sstr":".(((((.....(....)....))))).","form":".AAAA....A.A.........AAAA.-"},"m1_chain_A":{"num_nts":27,"num_chars":27,"bseq":"UGCUCCUAGUACGUAAGGACCGGAGUG","sstr":".(((((.....(....)....))))).","form":".AAAA....A.A.........AAAA.-"}},"chains":{"m1_chain_A":{"num_nts":27,"bseq":"UGCUCCUAGUACGUAAGGACCGGAGUG","sstr":".(((((.....(....)....))))).","form":".AAAA....A.A.........AAAA.-","helical_rise":0.301,"helical_rise_std":2.472,"helical_axis":[0.200,0.562,-0.803],"point1":[4.268,12.922,21.569],"point2":[5.984,17.744,14.674],"num_chars":79,"suite":"U1aG1aC1aU1aC1aC1aU5zA4sG#aU1aA1aC1aG1gU1LA1aA1cG1aG1eA1aC1aC1aG1aG1aA1aG1aU!!G"}},"num_nts":27,"nts":[{"index":1,"index_chain":1,"chain_name":"A","nt_resnum":2647,"nt_name":"U","nt_code":"U","nt_id":"|1|A|U|2647||||","linked_nts":[null,"|1|A|G|2648||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop","alpha":null,"beta":null,"gamma":-75.982,"delta":70.727,"epsilon":-129.786,"zeta":-73.136,"epsilon_zeta":-56.651,"bb_type":"--","chi":-179.582,"glyco_bond":"anti","C5prime_xyz":[-1.373,8.398,1.716],"P_xyz":[null,null,null],"form":".","ssZp":4.885,"Dp":4.897,"splay_angle":33.432,"splay_distance":4.979,"splay_ratio":0.289,"eta":null,"theta":null,"eta_prime":null,"theta_prime":null,"eta_base":null,"theta_base":null,"v0":7.537,"v1":-34.535,"v2":46.226,"v3":-43.812,"v4":23.051,"amplitude":46.922,"phase_angle":9.885,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"inc","cluster":"__","suiteness":0.000,"filter_rmsd":0.105,"frame":{"rmsd":0.011,"origin":[22.238,24.834,29.670],"x_axis":[0.716,0.261,-0.648],"y_axis":[0.148,-0.963,-0.224],"z_axis":[-0.683,0.065,-0.728],"quaternion":[-0.078,0.923,0.111,-0.360]}},{"index":2,"index_chain":2,"chain_name":"A","nt_resnum":2648,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2648||||","linked_nts":["|1|A|U|2647||||","|1|A|C|2649||||"],"nt_type":"RNA","dbn":"(","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end","alpha":-33.896,"beta":161.872,"gamma":32.027,"delta":91.865,"epsilon":-144.763,"zeta":-73.074,"epsilon_zeta":-71.689,"bb_type":"BI","chi":-167.788,"glyco_bond":"anti","C5prime_xyz":[-1.369,8.501,1.020],"P_xyz":[1.108,8.634,1.736],"form":"A","ssZp":4.474,"Dp":4.558,"splay_angle":22.832,"splay_distance":3.604,"splay_ratio":0.199,"eta":172.090,"theta":-133.253,"eta_prime":-163.513,"theta_prime":-131.240,"eta_base":-97.580,"theta_base":-93.137,"v0":9.547,"v1":-31.510,"v2":39.435,"v3":-35.521,"v4":16.806,"amplitude":39.605,"phase_angle":5.305,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.052,"filter_rmsd":0.012,"frame":{"rmsd":0.012,"origin":[22.582,25.813,24.799],"x_axis":[0.601,-0.644,-0.473],"y_axis":[-0.496,-0.765,0.412],"z_axis":[-0.627,-0.013,-0.779],"quaternion":[0.120,0.887,-0.321,-0.310]}},{"index":3,"index_chain":3,"chain_name":"A","nt_resnum":2649,"nt_name":"C","nt_code":"C","nt_id":"|1|A|C|2649||||","linked_nts":["|1|A|G|2648||||","|1|A|U|2650||||"],"nt_type":"RNA","dbn":"(","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem","alpha":-58.197,"beta":167.057,"gamma":47.640,"delta":84.071,"epsilon":-146.616,"zeta":-77.132,"epsilon_zeta":-69.484,"bb_type":"BI","chi":-160.499,"glyco_bond":"anti","C5prime_xyz":[-1.471,8.786,0.498],"P_xyz":[1.118,9.168,0.664],"form":"A","ssZp":4.415,"Dp":4.662,"splay_angle":23.496,"splay_distance":3.719,"splay_ratio":0.204,"eta":162.662,"theta":-140.127,"eta_prime":-177.975,"theta_prime":-138.877,"eta_base":-120.504,"theta_base":-104.829,"v0":4.046,"v1":-28.257,"v2":39.878,"v3":-38.405,"v4":21.921,"amplitude":40.904,"phase_angle":12.861,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.665,"filter_rmsd":0.064,"frame":{"rmsd":0.019,"origin":[22.132,25.171,21.282],"x_axis":[0.127,-0.990,-0.066],"y_axis":[-0.822,-0.142,0.552],"z_axis":[-0.556,-0.016,-0.831],"quaternion":[0.196,0.725,-0.625,-0.214]}},{"index":4,"index_chain":4,"chain_name":"A","nt_resnum":2650,"nt_name":"U","nt_code":"U","nt_id":"|1|A|U|2650||||","linked_nts":["|1|A|C|2649||||","|1|A|C|2651||||"],"nt_type":"RNA","dbn":"(","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem","alpha":-64.173,"beta":164.156,"gamma":60.346,"delta":79.816,"epsilon":-154.481,"zeta":-73.112,"epsilon_zeta":-81.369,"bb_type":"BI","chi":-167.171,"glyco_bond":"anti","C5prime_xyz":[-1.672,8.763,0.661],"P_xyz":[0.972,9.197,0.616],"form":"A","ssZp":4.403,"Dp":4.550,"splay_angle":21.631,"splay_distance":3.457,"splay_ratio":0.190,"eta":167.021,"theta":-148.307,"eta_prime":-174.531,"theta_prime":-150.067,"eta_base":-122.643,"theta_base":-127.889,"v0":-2.370,"v1":-25.478,"v2":41.862,"v3":-44.048,"v4":29.417,"amplitude":44.946,"phase_angle":21.348,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.875,"filter_rmsd":0.097,"frame":{"rmsd":0.019,"origin":[21.184,23.371,18.168],"x_axis":[-0.320,-0.861,0.395],"y_axis":[-0.779,0.476,0.408],"z_axis":[-0.539,-0.177,-0.823],"quaternion":[-0.288,-0.507,0.809,0.071]}},{"index":5,"index_chain":5,"chain_name":"A","nt_resnum":2651,"nt_name":"C","nt_code":"C","nt_id":"|1|A|C|2651||||","linked_nts":["|1|A|U|2650||||","|1|A|C|2652||||"],"nt_type":"RNA","dbn":"(","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem","alpha":-62.279,"beta":173.768,"gamma":46.172,"delta":84.344,"epsilon":-154.579,"zeta":-71.341,"epsilon_zeta":-83.238,"bb_type":"BI","chi":-159.016,"glyco_bond":"anti","C5prime_xyz":[-1.447,8.777,0.252],"P_xyz":[1.125,9.298,0.363],"form":"A","ssZp":4.287,"Dp":4.577,"splay_angle":24.060,"splay_distance":3.895,"splay_ratio":0.212,"eta":165.418,"theta":-147.237,"eta_prime":177.637,"theta_prime":-145.632,"eta_base":-144.323,"theta_base":-123.941,"v0":4.846,"v1":-32.452,"v2":45.711,"v3":-44.578,"v4":25.024,"amplitude":46.901,"phase_angle":12.932,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.871,"filter_rmsd":0.064,"frame":{"rmsd":0.024,"origin":[20.545,21.623,15.255],"x_axis":[-0.657,-0.478,0.583],"y_axis":[-0.558,0.828,0.052],"z_axis":[-0.508,-0.291,-0.811],"quaternion":[-0.300,-0.285,0.908,-0.066]}},{"index":6,"index_chain":6,"chain_name":"A","nt_resnum":2652,"nt_name":"C","nt_code":"C","nt_id":"|1|A|C|2652||||","linked_nts":["|1|A|C|2651||||","|1|A|U|2653||||"],"nt_type":"RNA","dbn":"(","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop","alpha":-67.493,"beta":175.181,"gamma":58.124,"delta":77.984,"epsilon":-153.954,"zeta":-67.015,"epsilon_zeta":-86.939,"bb_type":"BI","chi":-158.794,"glyco_bond":"anti","C5prime_xyz":[-1.774,8.862,0.430],"P_xyz":[0.779,9.500,0.623],"form":".","ssZp":4.282,"Dp":4.526,"splay_angle":22.842,"splay_distance":3.601,"splay_ratio":0.198,"eta":171.269,"theta":-141.970,"eta_prime":-176.343,"theta_prime":-139.265,"eta_base":-142.023,"theta_base":-91.528,"v0":2.933,"v1":-29.711,"v2":43.784,"v3":-44.031,"v4":25.940,"amplitude":45.433,"phase_angle":15.483,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.919,"filter_rmsd":0.063,"frame":{"rmsd":0.032,"origin":[18.930,18.849,13.049],"x_axis":[-0.723,0.042,0.690],"y_axis":[-0.201,0.942,-0.267],"z_axis":[-0.661,-0.332,-0.673],"quaternion":[-0.370,-0.044,0.914,-0.164]}},{"index":7,"index_chain":7,"chain_name":"A","nt_resnum":2653,"nt_name":"U","nt_code":"U","nt_id":"|1|A|U|2653||||","linked_nts":["|1|A|C|2652||||","|1|A|A|2654||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate","alpha":-61.758,"beta":167.392,"gamma":55.882,"delta":82.358,"epsilon":-149.397,"zeta":55.331,"epsilon_zeta":155.272,"bb_type":"--","chi":-151.015,"glyco_bond":"anti","C5prime_xyz":[-1.468,8.809,-0.148],"P_xyz":[1.146,9.111,-0.452],"form":".","ssZp":3.998,"Dp":4.621,"splay_angle":22.568,"splay_distance":3.586,"splay_ratio":0.197,"eta":172.244,"theta":-18.303,"eta_prime":-169.962,"theta_prime":-63.348,"eta_base":-107.899,"theta_base":-99.072,"v0":1.595,"v1":-28.212,"v2":42.323,"v3":-41.322,"v4":25.221,"amplitude":43.973,"phase_angle":15.750,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.929,"filter_rmsd":0.095,"frame":{"rmsd":0.019,"origin":[15.434,18.008,12.856],"x_axis":[-0.691,0.661,0.293],"y_axis":[0.204,0.566,-0.799],"z_axis":[-0.694,-0.492,-0.526],"quaternion":[-0.296,0.259,0.834,-0.387]}},{"index":8,"index_chain":8,"chain_name":"A","nt_resnum":2654,"nt_name":"A","nt_code":"A","nt_id":"|1|A|A|2654||||","linked_nts":["|1|A|U|2653||||","|1|A|G|2655||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop","alpha":165.233,"beta":133.819,"gamma":56.698,"delta":149.401,"epsilon":-98.344,"zeta":161.352,"epsilon_zeta":100.303,"bb_type":"BII","chi":-145.331,"glyco_bond":"anti","C5prime_xyz":[-2.007,8.820,-0.085],"P_xyz":[0.552,8.859,0.521],"form":".","ssZp":0.914,"Dp":0.916,"splay_angle":43.081,"splay_distance":7.237,"splay_ratio":0.367,"eta":46.283,"theta":172.017,"eta_prime":120.499,"theta_prime":135.581,"eta_base":126.406,"theta_base":150.349,"v0":-33.231,"v1":44.290,"v2":-38.722,"v3":20.051,"v4":8.460,"amplitude":44.253,"phase_angle":151.048,"puckering":"C2'-endo","sugar_class":"~C2'-endo","bin":"32p","cluster":"5z","suiteness":0.849,"filter_rmsd":0.038,"frame":{"rmsd":0.019,"origin":[12.098,18.165,11.549],"x_axis":[0.602,-0.783,0.153],"y_axis":[0.364,0.099,-0.926],"z_axis":[0.710,0.613,0.345],"quaternion":[0.715,-0.538,0.195,-0.401]}},{"index":9,"index_chain":9,"chain_name":"A","nt_resnum":2655,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2655||||","linked_nts":["|1|A|A|2654||||","|1|A|U|2656||||"],"nt_type":"RNA","dbn":".","summary":"turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop","alpha":-96.236,"beta":91.744,"gamma":179.322,"delta":149.324,"epsilon":-167.208,"zeta":141.405,"epsilon_zeta":51.387,"bb_type":"--","chi":-93.468,"glyco_bond":"anti","C5prime_xyz":[-3.296,7.861,-2.277],"P_xyz":[-4.505,7.494,-4.631],"form":".","ssZp":2.147,"Dp":2.142,"splay_angle":54.212,"splay_distance":8.086,"splay_ratio":0.457,"eta":-44.156,"theta":24.896,"eta_prime":-82.279,"theta_prime":58.970,"eta_base":-98.612,"theta_base":91.338,"v0":-37.334,"v1":50.130,"v2":-43.908,"v3":22.935,"v4":8.915,"amplitude":49.974,"phase_angle":151.477,"puckering":"C2'-endo","sugar_class":"~C2'-endo","bin":"22t","cluster":"4s","suiteness":0.730,"filter_rmsd":0.022,"frame":{"rmsd":0.022,"origin":[5.554,21.195,10.937],"x_axis":[-0.668,0.660,0.343],"y_axis":[-0.030,0.437,-0.899],"z_axis":[-0.744,-0.611,-0.272],"quaternion":[-0.353,0.204,0.771,-0.490]}},{"index":10,"index_chain":10,"chain_name":"A","nt_resnum":2656,"nt_name":"U","nt_code":"U","nt_id":"|1|A|U|2656||||","linked_nts":["|1|A|G|2655||||","|1|A|A|2657||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate","alpha":-72.528,"beta":157.795,"gamma":37.868,"delta":91.634,"epsilon":-140.967,"zeta":-65.561,"epsilon_zeta":-75.407,"bb_type":"BI","chi":-173.859,"glyco_bond":"anti","C5prime_xyz":[-1.529,8.414,1.363],"P_xyz":[0.930,8.199,2.276],"form":"A","ssZp":4.352,"Dp":4.423,"splay_angle":27.392,"splay_distance":4.431,"splay_ratio":0.240,"eta":170.891,"theta":-121.700,"eta_prime":163.113,"theta_prime":-122.716,"eta_base":161.882,"theta_base":-94.787,"v0":12.691,"v1":-32.874,"v2":39.592,"v3":-33.162,"v4":13.315,"amplitude":39.593,"phase_angle":0.429,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"23p","cluster":"#a","suiteness":0.842,"filter_rmsd":0.099,"frame":{"rmsd":0.020,"origin":[10.915,15.474,8.959],"x_axis":[-0.686,0.517,0.512],"y_axis":[-0.154,0.585,-0.796],"z_axis":[-0.711,-0.625,-0.322],"quaternion":[-0.380,0.113,0.805,-0.441]}},{"index":11,"index_chain":11,"chain_name":"A","nt_resnum":2657,"nt_name":"A","nt_code":"A","nt_id":"|1|A|A|2657||||","linked_nts":["|1|A|U|2656||||","|1|A|C|2658||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop","alpha":-68.731,"beta":174.511,"gamma":50.163,"delta":83.706,"epsilon":-145.098,"zeta":-61.146,"epsilon_zeta":-83.952,"bb_type":"BI","chi":-171.098,"glyco_bond":"anti","C5prime_xyz":[-1.950,8.726,1.058],"P_xyz":[0.490,9.419,1.765],"form":".","ssZp":4.488,"Dp":4.521,"splay_angle":32.912,"splay_distance":5.108,"splay_ratio":0.284,"eta":162.113,"theta":-127.401,"eta_prime":-177.669,"theta_prime":-123.187,"eta_base":-126.942,"theta_base":-67.015,"v0":-6.422,"v1":-21.700,"v2":39.923,"v3":-44.452,"v4":32.033,"amplitude":44.602,"phase_angle":26.480,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.693,"filter_rmsd":0.056,"frame":{"rmsd":0.023,"origin":[7.235,13.046,9.397],"x_axis":[-0.570,0.819,-0.071],"y_axis":[0.415,0.212,-0.885],"z_axis":[-0.710,-0.534,-0.460],"quaternion":[-0.213,0.412,0.749,-0.474]}},{"index":12,"index_chain":12,"chain_name":"A","nt_resnum":2658,"nt_name":"C","nt_code":"C","nt_id":"|1|A|C|2658||||","linked_nts":["|1|A|A|2657||||","|1|A|G|2659||||"],"nt_type":"RNA","dbn":"(","summary":"anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop","alpha":-72.025,"beta":172.711,"gamma":51.466,"delta":84.042,"epsilon":-151.766,"zeta":-62.875,"epsilon_zeta":-88.891,"bb_type":"BI","chi":-165.496,"glyco_bond":"anti","C5prime_xyz":[-1.394,8.768,0.699],"P_xyz":[1.221,9.076,0.763],"form":"A","ssZp":4.487,"Dp":4.701,"splay_angle":26.734,"splay_distance":4.289,"splay_ratio":0.235,"eta":159.429,"theta":-135.315,"eta_prime":-176.037,"theta_prime":-135.371,"eta_base":-98.166,"theta_base":-106.454,"v0":-0.040,"v1":-28.482,"v2":44.618,"v3":-44.445,"v4":28.389,"amplitude":46.891,"phase_angle":17.915,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.884,"filter_rmsd":0.060,"frame":{"rmsd":0.013,"origin":[3.317,14.674,6.553],"x_axis":[0.114,0.599,-0.793],"y_axis":[0.655,-0.645,-0.393],"z_axis":[-0.747,-0.474,-0.466],"quaternion":[0.027,0.746,0.420,-0.516]}},{"index":13,"index_chain":13,"chain_name":"A","nt_resnum":2659,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2659||||","linked_nts":["|1|A|C|2658||||","|1|A|U|2660||||"],"nt_type":"RNA","dbn":".","summary":"u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart","alpha":-71.797,"beta":-179.432,"gamma":49.417,"delta":80.935,"epsilon":-135.674,"zeta":-64.438,"epsilon_zeta":-71.237,"bb_type":"BI","chi":-172.864,"glyco_bond":"anti","C5prime_xyz":[-1.646,8.703,1.045],"P_xyz":[0.857,9.396,1.229],"form":".","ssZp":4.758,"Dp":4.946,"splay_angle":95.333,"splay_distance":13.168,"splay_ratio":0.739,"eta":167.595,"theta":-117.701,"eta_prime":-179.401,"theta_prime":-160.644,"eta_base":-134.103,"theta_base":156.867,"v0":-9.430,"v1":-20.595,"v2":40.133,"v3":-45.312,"v4":35.509,"amplitude":46.075,"phase_angle":29.420,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.894,"filter_rmsd":0.033,"frame":{"rmsd":0.033,"origin":[0.219,15.029,3.609],"x_axis":[0.601,0.180,-0.779],"y_axis":[0.466,-0.870,0.159],"z_axis":[-0.649,-0.459,-0.607],"quaternion":[0.176,0.877,0.184,-0.407]}},{"index":14,"index_chain":14,"chain_name":"A","nt_resnum":2660,"nt_name":"U","nt_code":"U","nt_id":"|1|A|U|2660||||","linked_nts":["|1|A|G|2659||||","|1|A|A|2661||||"],"nt_type":"RNA","dbn":".","summary":"turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart","alpha":166.226,"beta":136.321,"gamma":51.817,"delta":88.966,"epsilon":-124.280,"zeta":-88.060,"epsilon_zeta":-36.220,"bb_type":"--","chi":-157.276,"glyco_bond":"anti","C5prime_xyz":[-1.999,8.880,0.058],"P_xyz":[0.680,9.088,0.199],"form":".","ssZp":3.510,"Dp":3.951,"splay_angle":27.583,"splay_distance":4.628,"splay_ratio":0.251,"eta":15.080,"theta":-126.132,"eta_prime":43.455,"theta_prime":-124.945,"eta_base":20.952,"theta_base":-65.176,"v0":-8.918,"v1":-14.612,"v2":31.261,"v3":-37.449,"v4":29.015,"amplitude":36.975,"phase_angle":32.278,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1g","suiteness":0.736,"filter_rmsd":0.099,"frame":{"rmsd":0.020,"origin":[-9.426,6.638,6.764],"x_axis":[0.339,-0.609,0.717],"y_axis":[0.905,0.003,-0.425],"z_axis":[0.256,0.793,0.552],"quaternion":[0.688,-0.443,-0.167,-0.550]}},{"index":15,"index_chain":15,"chain_name":"A","nt_resnum":2661,"nt_name":"A","nt_code":"A","nt_id":"|1|A|A|2661||||","linked_nts":["|1|A|U|2660||||","|1|A|A|2662||||"],"nt_type":"RNA","dbn":".","summary":"u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate","alpha":-63.571,"beta":139.702,"gamma":65.553,"delta":89.305,"epsilon":-148.660,"zeta":-74.776,"epsilon_zeta":-73.884,"bb_type":"BI","chi":-130.900,"glyco_bond":"anti","C5prime_xyz":[-1.635,8.587,-1.067],"P_xyz":[0.817,8.208,-2.071],"form":".","ssZp":3.088,"Dp":4.236,"splay_angle":24.885,"splay_distance":4.179,"splay_ratio":0.226,"eta":160.382,"theta":-132.004,"eta_prime":-169.352,"theta_prime":-138.679,"eta_base":-95.794,"theta_base":-93.344,"v0":7.247,"v1":-28.683,"v2":38.254,"v3":-34.956,"v4":17.541,"amplitude":38.631,"phase_angle":8.010,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1L","suiteness":0.688,"filter_rmsd":0.035,"frame":{"rmsd":0.015,"origin":[-5.444,7.716,8.861],"x_axis":[0.930,-0.359,0.077],"y_axis":[0.325,0.708,-0.627],"z_axis":[0.171,0.608,0.776],"quaternion":[0.924,-0.334,0.025,-0.185]}},{"index":16,"index_chain":16,"chain_name":"A","nt_resnum":2662,"nt_name":"A","nt_code":"A","nt_id":"|1|A|A|2662||||","linked_nts":["|1|A|A|2661||||","|1|A|G|2663||A||"],"nt_type":"RNA","dbn":".","summary":"u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate","alpha":-65.449,"beta":164.553,"gamma":51.392,"delta":89.520,"epsilon":-135.376,"zeta":-65.824,"epsilon_zeta":-69.552,"bb_type":"BI","chi":-130.898,"glyco_bond":"anti","C5prime_xyz":[-1.463,8.418,-1.338],"P_xyz":[1.053,8.235,-2.124],"form":".","ssZp":2.705,"Dp":4.682,"splay_angle":44.814,"splay_distance":7.741,"splay_ratio":0.383,"eta":167.009,"theta":-83.019,"eta_prime":-174.804,"theta_prime":-81.675,"eta_base":-116.966,"theta_base":-64.236,"v0":0.011,"v1":-21.085,"v2":32.934,"v3":-33.877,"v4":21.432,"amplitude":34.759,"phase_angle":18.652,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.692,"filter_rmsd":0.039,"frame":{"rmsd":0.010,"origin":[-2.256,10.164,10.005],"x_axis":[0.855,0.136,-0.501],"y_axis":[-0.307,0.910,-0.278],"z_axis":[0.418,0.392,0.820],"quaternion":[0.947,-0.177,0.243,0.117]}},{"index":17,"index_chain":17,"chain_name":"A","nt_resnum":2663,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2663||A||","linked_nts":["|1|A|A|2662||||","|1|A|G|2664||||"],"nt_type":"RNA","dbn":")","summary":"anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,cap-acceptor","alpha":145.714,"beta":-139.817,"gamma":-168.753,"delta":82.681,"epsilon":-146.022,"zeta":-59.616,"epsilon_zeta":-86.407,"bb_type":"BI","chi":-170.941,"glyco_bond":"anti","C5prime_xyz":[-1.766,8.717,0.991],"P_xyz":[-1.010,10.450,-0.770],"form":".","ssZp":4.709,"Dp":4.823,"splay_angle":35.714,"splay_distance":5.498,"splay_ratio":0.308,"eta":172.592,"theta":-153.979,"eta_prime":-148.158,"theta_prime":-148.598,"eta_base":-101.150,"theta_base":-96.995,"v0":-7.931,"v1":-22.696,"v2":42.303,"v3":-47.281,"v4":35.699,"amplitude":47.757,"phase_angle":27.652,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33t","cluster":"1c","suiteness":0.321,"filter_rmsd":0.019,"frame":{"rmsd":0.019,"origin":[3.172,14.392,6.457],"x_axis":[0.149,0.645,-0.750],"y_axis":[-0.740,0.575,0.348],"z_axis":[0.656,0.503,0.563],"quaternion":[0.756,-0.051,0.465,0.458]}},{"index":18,"index_chain":18,"chain_name":"A","nt_resnum":2664,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2664||||","linked_nts":["|1|A|G|2663||A||","|1|A|A|2665||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor","alpha":-61.434,"beta":173.115,"gamma":52.290,"delta":77.568,"epsilon":-159.051,"zeta":-80.796,"epsilon_zeta":-78.255,"bb_type":"BI","chi":-162.774,"glyco_bond":"anti","C5prime_xyz":[-1.294,8.739,0.633],"P_xyz":[1.335,9.093,0.647],"form":".","ssZp":4.478,"Dp":4.634,"splay_angle":74.595,"splay_distance":11.741,"splay_ratio":0.612,"eta":166.177,"theta":166.894,"eta_prime":-168.925,"theta_prime":147.369,"eta_base":-95.473,"theta_base":137.886,"v0":7.399,"v1":-33.596,"v2":45.859,"v3":-43.096,"v4":22.106,"amplitude":46.529,"phase_angle":9.732,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.878,"filter_rmsd":0.014,"frame":{"rmsd":0.014,"origin":[4.904,19.416,5.044],"x_axis":[-0.598,0.796,-0.098],"y_axis":[-0.406,-0.194,0.893],"z_axis":[0.691,0.574,0.439],"quaternion":[0.402,0.199,0.491,0.747]}},{"index":19,"index_chain":19,"chain_name":"A","nt_resnum":2665,"nt_name":"A","nt_code":"A","nt_id":"|1|A|A|2665||||","linked_nts":["|1|A|G|2664||||","|1|A|C|2666||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate","alpha":-100.937,"beta":72.349,"gamma":170.409,"delta":85.507,"epsilon":-153.249,"zeta":-77.235,"epsilon_zeta":-76.014,"bb_type":"BI","chi":-179.053,"glyco_bond":"anti","C5prime_xyz":[-1.007,8.211,1.542],"P_xyz":[-1.528,10.532,0.283],"form":".","ssZp":4.736,"Dp":4.749,"splay_angle":25.770,"splay_distance":4.017,"splay_ratio":0.233,"eta":-155.633,"theta":141.611,"eta_prime":175.004,"theta_prime":164.284,"eta_base":154.705,"theta_base":-178.622,"v0":11.209,"v1":-35.620,"v2":45.245,"v3":-39.615,"v4":18.071,"amplitude":45.382,"phase_angle":4.458,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33t","cluster":"1e","suiteness":0.875,"filter_rmsd":0.040,"frame":{"rmsd":0.014,"origin":[13.078,11.706,8.448],"x_axis":[0.266,0.570,-0.778],"y_axis":[-0.587,0.736,0.338],"z_axis":[0.765,0.366,0.530],"quaternion":[0.795,-0.009,0.485,0.363]}},{"index":20,"index_chain":20,"chain_name":"A","nt_resnum":2666,"nt_name":"C","nt_code":"C","nt_id":"|1|A|C|2666||||","linked_nts":["|1|A|A|2665||||","|1|A|C|2667||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate","alpha":-58.856,"beta":171.741,"gamma":58.475,"delta":80.604,"epsilon":-139.379,"zeta":-61.182,"epsilon_zeta":-78.197,"bb_type":"BI","chi":-165.329,"glyco_bond":"anti","C5prime_xyz":[-1.418,8.728,0.855],"P_xyz":[1.169,9.102,0.902],"form":".","ssZp":4.571,"Dp":4.738,"splay_angle":32.109,"splay_distance":4.972,"splay_ratio":0.277,"eta":-178.401,"theta":-125.253,"eta_prime":-168.954,"theta_prime":-122.986,"eta_base":-153.915,"theta_base":-74.820,"v0":1.998,"v1":-27.624,"v2":41.161,"v3":-41.228,"v4":24.638,"amplitude":42.813,"phase_angle":15.966,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.891,"filter_rmsd":0.068,"frame":{"rmsd":0.016,"origin":[16.665,10.197,9.446],"x_axis":[0.150,0.824,-0.547],"y_axis":[-0.557,0.527,0.642],"z_axis":[0.817,0.208,0.537],"quaternion":[0.744,0.146,0.458,0.464]}},{"index":21,"index_chain":21,"chain_name":"A","nt_resnum":2667,"nt_name":"C","nt_code":"C","nt_id":"|1|A|C|2667||||","linked_nts":["|1|A|C|2666||||","|1|A|G|2668||||"],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop","alpha":-61.883,"beta":166.761,"gamma":51.177,"delta":82.100,"epsilon":-138.507,"zeta":-56.671,"epsilon_zeta":-81.836,"bb_type":"BI","chi":-165.683,"glyco_bond":"anti","C5prime_xyz":[-1.253,8.682,0.792],"P_xyz":[1.381,8.970,0.764],"form":".","ssZp":4.532,"Dp":4.793,"splay_angle":37.344,"splay_distance":5.701,"splay_ratio":0.321,"eta":164.567,"theta":-120.707,"eta_prime":-172.888,"theta_prime":-116.046,"eta_base":-101.551,"theta_base":-71.599,"v0":1.870,"v1":-30.711,"v2":45.696,"v3":-45.978,"v4":28.167,"amplitude":47.650,"phase_angle":16.465,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.887,"filter_rmsd":0.064,"frame":{"rmsd":0.029,"origin":[19.216,14.463,9.543],"x_axis":[-0.455,0.873,0.175],"y_axis":[-0.352,-0.357,0.865],"z_axis":[0.818,0.332,0.470],"quaternion":[0.406,0.329,0.396,0.755]}},{"index":22,"index_chain":22,"chain_name":"A","nt_resnum":2668,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2668||||","linked_nts":["|1|A|C|2667||||","|1|A|G|2669||A||"],"nt_type":"RNA","dbn":")","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop","alpha":-65.334,"beta":169.316,"gamma":57.921,"delta":74.750,"epsilon":-148.636,"zeta":-79.712,"epsilon_zeta":-68.924,"bb_type":"BI","chi":-167.211,"glyco_bond":"anti","C5prime_xyz":[-1.164,8.620,1.021],"P_xyz":[1.454,8.885,1.049],"form":"A","ssZp":4.589,"Dp":4.729,"splay_angle":24.021,"splay_distance":3.690,"splay_ratio":0.211,"eta":164.898,"theta":-150.023,"eta_prime":-168.406,"theta_prime":-145.796,"eta_base":-97.396,"theta_base":-120.166,"v0":9.120,"v1":-34.395,"v2":44.361,"v3":-40.892,"v4":20.047,"amplitude":44.720,"phase_angle":7.273,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.756,"filter_rmsd":0.012,"frame":{"rmsd":0.012,"origin":[19.277,19.023,12.964],"x_axis":[-0.615,0.088,0.784],"y_axis":[0.260,-0.916,0.306],"z_axis":[0.745,0.392,0.540],"quaternion":[-0.049,0.436,0.199,0.876]}},{"index":23,"index_chain":23,"chain_name":"A","nt_resnum":2669,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2669||A||","linked_nts":["|1|A|G|2668||||","|1|A|A|2670||||"],"nt_type":"RNA","dbn":")","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem","alpha":-47.572,"beta":158.228,"gamma":54.610,"delta":77.513,"epsilon":-153.498,"zeta":-66.035,"epsilon_zeta":-87.463,"bb_type":"BI","chi":-168.493,"glyco_bond":"anti","C5prime_xyz":[-1.481,8.661,1.048],"P_xyz":[1.231,8.906,1.057],"form":"A","ssZp":4.587,"Dp":4.651,"splay_angle":24.400,"splay_distance":3.811,"splay_ratio":0.215,"eta":171.276,"theta":-139.764,"eta_prime":-172.828,"theta_prime":-139.548,"eta_base":-131.722,"theta_base":-111.747,"v0":4.520,"v1":-31.333,"v2":45.059,"v3":-43.505,"v4":24.445,"amplitude":46.250,"phase_angle":13.032,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.625,"filter_rmsd":0.020,"frame":{"rmsd":0.020,"origin":[20.546,21.766,15.081],"x_axis":[-0.437,-0.416,0.798],"y_axis":[0.574,-0.812,-0.109],"z_axis":[0.693,0.410,0.593],"quaternion":[-0.293,0.442,0.089,0.843]}},{"index":24,"index_chain":24,"chain_name":"A","nt_resnum":2670,"nt_name":"A","nt_code":"A","nt_id":"|1|A|A|2670||||","linked_nts":["|1|A|G|2669||A||","|1|A|G|2671||||"],"nt_type":"RNA","dbn":")","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem","alpha":-66.159,"beta":171.432,"gamma":58.080,"delta":80.685,"epsilon":-148.900,"zeta":-83.066,"epsilon_zeta":-65.834,"bb_type":"BI","chi":-165.481,"glyco_bond":"anti","C5prime_xyz":[-1.669,8.661,0.861],"P_xyz":[0.906,9.114,1.076],"form":"A","ssZp":4.442,"Dp":4.574,"splay_angle":22.814,"splay_distance":3.543,"splay_ratio":0.200,"eta":170.631,"theta":-153.195,"eta_prime":-173.835,"theta_prime":-152.741,"eta_base":-127.229,"theta_base":-132.016,"v0":5.286,"v1":-32.851,"v2":46.747,"v3":-45.266,"v4":25.055,"amplitude":47.903,"phase_angle":12.609,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.914,"filter_rmsd":0.034,"frame":{"rmsd":0.019,"origin":[21.271,23.583,18.352],"x_axis":[-0.062,-0.829,0.556],"y_axis":[0.748,-0.407,-0.524],"z_axis":[0.661,0.384,0.645],"quaternion":[0.542,-0.418,0.048,-0.727]}},{"index":25,"index_chain":25,"chain_name":"A","nt_resnum":2671,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2671||||","linked_nts":["|1|A|A|2670||||","|1|A|U|2672||||"],"nt_type":"RNA","dbn":")","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem","alpha":-63.255,"beta":167.467,"gamma":56.501,"delta":82.009,"epsilon":-151.205,"zeta":-63.892,"epsilon_zeta":-87.313,"bb_type":"BI","chi":-163.679,"glyco_bond":"anti","C5prime_xyz":[-1.493,8.655,0.779],"P_xyz":[1.103,9.027,0.802],"form":"A","ssZp":4.474,"Dp":4.616,"splay_angle":22.800,"splay_distance":3.638,"splay_ratio":0.201,"eta":170.410,"theta":-134.447,"eta_prime":-179.964,"theta_prime":-133.060,"eta_base":-147.090,"theta_base":-94.683,"v0":7.566,"v1":-33.230,"v2":44.596,"v3":-41.381,"v4":21.653,"amplitude":45.177,"phase_angle":9.203,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.878,"filter_rmsd":0.023,"frame":{"rmsd":0.023,"origin":[21.997,25.240,21.399],"x_axis":[0.262,-0.949,0.175],"y_axis":[0.729,0.076,-0.680],"z_axis":[0.632,0.306,0.712],"quaternion":[0.716,-0.344,0.160,-0.586]}},{"index":26,"index_chain":26,"chain_name":"A","nt_resnum":2672,"nt_name":"U","nt_code":"U","nt_id":"|1|A|U|2672||||","linked_nts":["|1|A|G|2671||||","|1|A|G|2673||||"],"nt_type":"RNA","dbn":")","summary":"anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end","alpha":-60.296,"beta":168.371,"gamma":54.698,"delta":85.108,"epsilon":-154.470,"zeta":-92.377,"epsilon_zeta":-62.094,"bb_type":"BI","chi":-152.805,"glyco_bond":"anti","C5prime_xyz":[-1.690,8.794,0.111],"P_xyz":[0.909,9.340,0.199],"form":".","ssZp":4.001,"Dp":4.367,"splay_angle":27.527,"splay_distance":4.411,"splay_ratio":0.238,"eta":172.240,"theta":-167.888,"eta_prime":-166.607,"theta_prime":-170.649,"eta_base":-110.580,"theta_base":-171.560,"v0":-0.319,"v1":-23.035,"v2":35.931,"v3":-37.553,"v4":23.610,"amplitude":38.041,"phase_angle":19.171,"puckering":"C3'-endo","sugar_class":"~C3'-endo","bin":"33p","cluster":"1a","suiteness":0.912,"filter_rmsd":0.101,"frame":{"rmsd":0.024,"origin":[23.847,23.814,24.188],"x_axis":[0.658,-0.671,-0.343],"y_axis":[0.479,0.724,-0.497],"z_axis":[0.581,0.163,0.797],"quaternion":[0.891,-0.185,0.259,-0.322]}},{"index":27,"index_chain":27,"chain_name":"A","nt_resnum":2673,"nt_name":"G","nt_code":"G","nt_id":"|1|A|G|2673||||","linked_nts":["|1|A|U|2672||||",null],"nt_type":"RNA","dbn":".","summary":"anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop","alpha":-47.492,"beta":-171.109,"gamma":14.608,"delta":88.086,"epsilon":null,"zeta":null,"epsilon_zeta":null,"bb_type":"--","chi":-141.929,"glyco_bond":"anti","C5prime_xyz":[-0.824,8.431,-0.560],"P_xyz":[1.653,9.137,-0.193],"form":"-","ssZp":null,"Dp":null,"splay_angle":null,"splay_distance":null,"splay_ratio":null,"eta":null,"theta":null,"eta_prime":null,"theta_prime":null,"eta_base":null,"theta_base":null,"v0":17.131,"v1":-39.613,"v2":45.361,"v3":-37.060,"v4":12.871,"amplitude":45.415,"phase_angle":357.206,"puckering":"C2'-exo","sugar_class":"~C3'-endo","bin":"trig","cluster":"!!","suiteness":0.000,"filter_rmsd":0.010,"frame":{"rmsd":0.010,"origin":[23.278,24.971,28.406],"x_axis":[0.666,-0.481,-0.570],"y_axis":[0.382,0.877,-0.292],"z_axis":[0.640,-0.023,0.768],"quaternion":[0.910,-0.074,0.333,-0.237]}}],"num_hbonds":40,"hbonds":[{"index":1,"atom1_serNum":15,"atom2_serNum":578,"donAcc_type":"standard","distance":2.768,"atom1_id":"|1|A|U|2647|O4|||","atom2_id":"|1|A|G|2673|N1|||","res_short":"UG","res_long":"|1|A|U|2647||||,|1|A|G|2673||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":2,"atom1_serNum":35,"atom2_serNum":555,"donAcc_type":"standard","distance":2.776,"atom1_id":"|1|A|G|2648|O6|||","atom2_id":"|1|A|U|2672|N3|||","res_short":"GU","res_long":"|1|A|G|2648||||,|1|A|U|2672||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":3,"atom1_serNum":36,"atom2_serNum":554,"donAcc_type":"standard","distance":2.826,"atom1_id":"|1|A|G|2648|N1|||","atom2_id":"|1|A|U|2672|O2|||","res_short":"GU","res_long":"|1|A|G|2648||||,|1|A|U|2672||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":4,"atom1_serNum":55,"atom2_serNum":537,"donAcc_type":"standard","distance":2.965,"atom1_id":"|1|A|C|2649|O2|||","atom2_id":"|1|A|G|2671|N2|||","res_short":"CG","res_long":"|1|A|C|2649||||,|1|A|G|2671||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":5,"atom1_serNum":56,"atom2_serNum":535,"donAcc_type":"standard","distance":2.836,"atom1_id":"|1|A|C|2649|N3|||","atom2_id":"|1|A|G|2671|N1|||","res_short":"CG","res_long":"|1|A|C|2649||||,|1|A|G|2671||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":6,"atom1_serNum":58,"atom2_serNum":534,"donAcc_type":"standard","distance":2.769,"atom1_id":"|1|A|C|2649|N4|||","atom2_id":"|1|A|G|2671|O6|||","res_short":"CG","res_long":"|1|A|C|2649||||,|1|A|G|2671||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":7,"atom1_serNum":76,"atom2_serNum":513,"donAcc_type":"standard","distance":2.806,"atom1_id":"|1|A|U|2650|N3|||","atom2_id":"|1|A|A|2670|N1|||","res_short":"UA","res_long":"|1|A|U|2650||||,|1|A|A|2670||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":8,"atom1_serNum":78,"atom2_serNum":512,"donAcc_type":"standard","distance":3.129,"atom1_id":"|1|A|U|2650|O4|||","atom2_id":"|1|A|A|2670|N6|||","res_short":"UA","res_long":"|1|A|U|2650||||,|1|A|A|2670||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":9,"atom1_serNum":95,"atom2_serNum":492,"donAcc_type":"standard","distance":2.703,"atom1_id":"|1|A|C|2651|O2|||","atom2_id":"|1|A|G|2669|N2|||","res_short":"CG","res_long":"|1|A|C|2651||||,|1|A|G|2669||A||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":10,"atom1_serNum":96,"atom2_serNum":490,"donAcc_type":"standard","distance":2.853,"atom1_id":"|1|A|C|2651|N3|||","atom2_id":"|1|A|G|2669|N1|||","res_short":"CG","res_long":"|1|A|C|2651||||,|1|A|G|2669||A||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":11,"atom1_serNum":98,"atom2_serNum":489,"donAcc_type":"standard","distance":2.987,"atom1_id":"|1|A|C|2651|N4|||","atom2_id":"|1|A|G|2669|O6|||","res_short":"CG","res_long":"|1|A|C|2651||||,|1|A|G|2669||A||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":12,"atom1_serNum":115,"atom2_serNum":466,"donAcc_type":"standard","distance":2.817,"atom1_id":"|1|A|C|2652|O2|||","atom2_id":"|1|A|G|2668|N2|||","res_short":"CG","res_long":"|1|A|C|2652||||,|1|A|G|2668||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":13,"atom1_serNum":116,"atom2_serNum":464,"donAcc_type":"standard","distance":2.907,"atom1_id":"|1|A|C|2652|N3|||","atom2_id":"|1|A|G|2668|N1|||","res_short":"CG","res_long":"|1|A|C|2652||||,|1|A|G|2668||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":14,"atom1_serNum":118,"atom2_serNum":463,"donAcc_type":"standard","distance":2.897,"atom1_id":"|1|A|C|2652|N4|||","atom2_id":"|1|A|G|2668|O6|||","res_short":"CG","res_long":"|1|A|C|2652||||,|1|A|G|2668||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":15,"atom1_serNum":123,"atom2_serNum":151,"donAcc_type":"acceptable","distance":2.622,"atom1_id":"|1|A|U|2653|OP2|||","atom2_id":"|1|A|A|2654|O2'|||","res_short":"UA","res_long":"|1|A|U|2653||||,|1|A|A|2654||||","atom_pair":"O:O","residue_pair":"nt:nt"},{"index":16,"atom1_serNum":135,"atom2_serNum":443,"donAcc_type":"standard","distance":2.898,"atom1_id":"|1|A|U|2653|O2|||","atom2_id":"|1|A|C|2667|N4|||","res_short":"UC","res_long":"|1|A|U|2653||||,|1|A|C|2667||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":17,"atom1_serNum":147,"atom2_serNum":192,"donAcc_type":"questionable","distance":3.054,"atom1_id":"|1|A|A|2654|O4'|||","atom2_id":"|1|A|U|2656|O4'|||","res_short":"AU","res_long":"|1|A|A|2654||||,|1|A|U|2656||||","atom_pair":"O:O","residue_pair":"nt:nt"},{"index":18,"atom1_serNum":158,"atom2_serNum":408,"donAcc_type":"standard","distance":2.960,"atom1_id":"|1|A|A|2654|N6|||","atom2_id":"|1|A|C|2666|OP2|||","res_short":"AC","res_long":"|1|A|A|2654||||,|1|A|C|2666||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":19,"atom1_serNum":173,"atom2_serNum":188,"donAcc_type":"acceptable","distance":2.923,"atom1_id":"|1|A|G|2655|O2'|||","atom2_id":"|1|A|U|2656|OP2|||","res_short":"GU","res_long":"|1|A|G|2655||||,|1|A|U|2656||||","atom_pair":"O:O","residue_pair":"nt:nt"},{"index":20,"atom1_serNum":173,"atom2_serNum":378,"donAcc_type":"acceptable","distance":3.093,"atom1_id":"|1|A|G|2655|O2'|||","atom2_id":"|1|A|G|2664|O6|||","res_short":"GG","res_long":"|1|A|G|2655||||,|1|A|G|2664||||","atom_pair":"O:O","residue_pair":"nt:nt"},{"index":21,"atom1_serNum":173,"atom2_serNum":379,"donAcc_type":"acceptable","distance":3.343,"atom1_id":"|1|A|G|2655|O2'|||","atom2_id":"|1|A|G|2664|N1|||","res_short":"GG","res_long":"|1|A|G|2655||||,|1|A|G|2664||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":22,"atom1_serNum":181,"atom2_serNum":386,"donAcc_type":"standard","distance":2.768,"atom1_id":"|1|A|G|2655|N1|||","atom2_id":"|1|A|A|2665|OP2|||","res_short":"GA","res_long":"|1|A|G|2655||||,|1|A|A|2665||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":23,"atom1_serNum":183,"atom2_serNum":203,"donAcc_type":"standard","distance":2.754,"atom1_id":"|1|A|G|2655|N2|||","atom2_id":"|1|A|U|2656|O4|||","res_short":"GU","res_long":"|1|A|G|2655||||,|1|A|U|2656||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":24,"atom1_serNum":183,"atom2_serNum":387,"donAcc_type":"standard","distance":2.887,"atom1_id":"|1|A|G|2655|N2|||","atom2_id":"|1|A|A|2665|O5'|||","res_short":"GA","res_long":"|1|A|G|2655||||,|1|A|A|2665||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":25,"atom1_serNum":188,"atom2_serNum":379,"donAcc_type":"standard","distance":3.044,"atom1_id":"|1|A|U|2656|OP2|||","atom2_id":"|1|A|G|2664|N1|||","res_short":"UG","res_long":"|1|A|U|2656||||,|1|A|G|2664||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":26,"atom1_serNum":188,"atom2_serNum":381,"donAcc_type":"standard","distance":2.944,"atom1_id":"|1|A|U|2656|OP2|||","atom2_id":"|1|A|G|2664|N2|||","res_short":"UG","res_long":"|1|A|U|2656||||,|1|A|G|2664||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":27,"atom1_serNum":200,"atom2_serNum":401,"donAcc_type":"standard","distance":3.122,"atom1_id":"|1|A|U|2656|O2|||","atom2_id":"|1|A|A|2665|N6|||","res_short":"UA","res_long":"|1|A|U|2656||||,|1|A|A|2665||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":28,"atom1_serNum":201,"atom2_serNum":398,"donAcc_type":"standard","distance":2.759,"atom1_id":"|1|A|U|2656|N3|||","atom2_id":"|1|A|A|2665|N7|||","res_short":"UA","res_long":"|1|A|U|2656||||,|1|A|A|2665||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":29,"atom1_serNum":220,"atom2_serNum":381,"donAcc_type":"standard","distance":3.035,"atom1_id":"|1|A|A|2657|N7|||","atom2_id":"|1|A|G|2664|N2|||","res_short":"AG","res_long":"|1|A|A|2657||||,|1|A|G|2664||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":30,"atom1_serNum":223,"atom2_serNum":371,"donAcc_type":"acceptable","distance":2.963,"atom1_id":"|1|A|A|2657|N6|||","atom2_id":"|1|A|G|2664|O2'|||","res_short":"AG","res_long":"|1|A|A|2657||||,|1|A|G|2664||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":31,"atom1_serNum":223,"atom2_serNum":382,"donAcc_type":"standard","distance":3.039,"atom1_id":"|1|A|A|2657|N6|||","atom2_id":"|1|A|G|2664|N3|||","res_short":"AG","res_long":"|1|A|A|2657||||,|1|A|G|2664||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":32,"atom1_serNum":242,"atom2_serNum":358,"donAcc_type":"standard","distance":2.821,"atom1_id":"|1|A|C|2658|O2|||","atom2_id":"|1|A|G|2663|N2|||","res_short":"CG","res_long":"|1|A|C|2658||||,|1|A|G|2663||A||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":33,"atom1_serNum":243,"atom2_serNum":356,"donAcc_type":"standard","distance":2.890,"atom1_id":"|1|A|C|2658|N3|||","atom2_id":"|1|A|G|2663|N1|||","res_short":"CG","res_long":"|1|A|C|2658||||,|1|A|G|2663||A||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":34,"atom1_serNum":245,"atom2_serNum":355,"donAcc_type":"standard","distance":2.887,"atom1_id":"|1|A|C|2658|N4|||","atom2_id":"|1|A|G|2663|O6|||","res_short":"CG","res_long":"|1|A|C|2658||||,|1|A|G|2663||A||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":35,"atom1_serNum":258,"atom2_serNum":305,"donAcc_type":"acceptable","distance":2.604,"atom1_id":"|1|A|G|2659|O2'|||","atom2_id":"|1|A|A|2661|N7|||","res_short":"GA","res_long":"|1|A|G|2659||||,|1|A|A|2661||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":36,"atom1_serNum":258,"atom2_serNum":308,"donAcc_type":"acceptable","distance":3.264,"atom1_id":"|1|A|G|2659|O2'|||","atom2_id":"|1|A|A|2661|N6|||","res_short":"GA","res_long":"|1|A|G|2659||||,|1|A|A|2661||||","atom_pair":"O:N","residue_pair":"nt:nt"},{"index":37,"atom1_serNum":268,"atom2_serNum":315,"donAcc_type":"standard","distance":2.973,"atom1_id":"|1|A|G|2659|N2|||","atom2_id":"|1|A|A|2662|OP2|||","res_short":"GA","res_long":"|1|A|G|2659||||,|1|A|A|2662||||","atom_pair":"N:O","residue_pair":"nt:nt"},{"index":38,"atom1_serNum":268,"atom2_serNum":327,"donAcc_type":"standard","distance":2.864,"atom1_id":"|1|A|G|2659|N2|||","atom2_id":"|1|A|A|2662|N7|||","res_short":"GA","res_long":"|1|A|G|2659||||,|1|A|A|2662||||","atom_pair":"N:N","residue_pair":"nt:nt"},{"index":39,"atom1_serNum":371,"atom2_serNum":390,"donAcc_type":"acceptable","distance":2.751,"atom1_id":"|1|A|G|2664|O2'|||","atom2_id":"|1|A|A|2665|O4'|||","res_short":"GA","res_long":"|1|A|G|2664||||,|1|A|A|2665||||","atom_pair":"O:O","residue_pair":"nt:nt"},{"index":40,"atom1_serNum":550,"atom2_serNum":566,"donAcc_type":"acceptable","distance":3.372,"atom1_id":"|1|A|U|2672|O2'|||","atom2_id":"|1|A|G|2673|O4'|||","res_short":"UG","res_long":"|1|A|U|2672||||,|1|A|G|2673||||","atom_pair":"O:O","residue_pair":"nt:nt"}],"refCoords":{"purine":["   12 ATOMS,    12 BONDS","    1 N      -2.2500   5.0000   0.2500","    2 N      -2.2500   0.5000   0.2500","    3 N      -2.2500   0.5000  -0.2500","    4 N      -2.2500   5.0000  -0.2500","    5 C       2.2500   5.0000   0.2500","    6 C       2.2500   0.5000   0.2500","    7 C       2.2500   0.5000  -0.2500","    8 C       2.2500   5.0000  -0.2500","    9 C      -2.2500   5.0000   0.2500","   10 C      -2.2500   0.5000   0.2500","   11 C      -2.2500   0.5000  -0.2500","   12 C      -2.2500   5.0000  -0.2500","    1     1     2","    2     2     3","    3     3     4","    4     4     1","    5     5     6","    6     6     7","    7     7     8","    8     5     8","    9     9     5","   10    10     6","   11    11     7","   12    12     8"],"pyrimidine":["   12 ATOMS,    12 BONDS","    1 N      -2.2500   5.0000   0.2500","    2 N      -2.2500   2.0000   0.2500","    3 N      -2.2500   2.0000  -0.2500","    4 N      -2.2500   5.0000  -0.2500","    5 C       2.2500   5.0000   0.2500","    6 C       2.2500   2.0000   0.2500","    7 C       2.2500   2.0000  -0.2500","    8 C       2.2500   5.0000  -0.2500","    9 C      -2.2500   5.0000   0.2500","   10 C      -2.2500   2.0000   0.2500","   11 C      -2.2500   2.0000  -0.2500","   12 C      -2.2500   5.0000  -0.2500","    1     1     2","    2     2     3","    3     3     4","    4     4     1","    5     5     6","    6     6     7","    7     7     8","    8     5     8","    9     9     5","   10    10     6","   11    11     7","   12    12     8"],"wc_pair":["   12 ATOMS,    12 BONDS","    1 N      -2.2500   5.0000   0.2500","    2 N      -2.2500  -5.0000   0.2500","    3 N      -2.2500  -5.0000  -0.2500","    4 N      -2.2500   5.0000  -0.2500","    5 C       2.2500   5.0000   0.2500","    6 C       2.2500  -5.0000   0.2500","    7 C       2.2500  -5.0000  -0.2500","    8 C       2.2500   5.0000  -0.2500","    9 C      -2.2500   5.0000   0.2500","   10 C      -2.2500  -5.0000   0.2500","   11 C      -2.2500  -5.0000  -0.2500","   12 C      -2.2500   5.0000  -0.2500","    1     1     2","    2     2     3","    3     3     4","    4     4     1","    5     5     6","    6     6     7","    7     7     8","    8     5     8","    9     9     5","   10    10     6","   11    11     7","   12    12     8"]},"paths":{"pairs":"nt1,nt2","multiplets":"nts_long","helices":"pairs.nt1,nt2","stems":"pairs.nt1,nt2","isoCanonPairs":"nt1,nt2","coaxStacks":"stem_indices.pairs.nt1,nt2","hairpins":"nts_long","bulges":"nts_long","iloops":"nts_long","junctions":"nts_long","kissingLoops":"hairpin_indices.nts_long","ssSegments":"nts_long","stacks":"nts_long","nonStack":"nts_long","hbonds":"res_long;atom1_id,atom2_id","nts":"nt_id"},"counts":{"pairs":13,"multiplets":1,"helices":1,"stems":1,"isoCanonPairs":1,"hairpins":1,"iloops":1,"ssSegments":2,"stacks":5,"hbonds":40,"nts":27},"metadata":{"version":"DSSR v2.4-2021nov11 by xiangjun@x3dna.org","license":"http://innovation.columbia.edu/technologies/CU20391","url":"http://x3dna.org/","url_alt":"http://home.x3dna.org/","forum":"http://forum.x3dna.org/","citation":"Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].","input_file":"/var/www/dssr/tmpfiles/dssr-4t9EYi","str_id":"dssr-4t9EYi","num_naChains":1,"naChains":"A=27","num_atoms":685,"num_waters":0,"num_notes":52,"notes":[{"Aminors":"A-minor interactions (including types I and II)"},{"Cstem_index":"stem index of the 'Canonical' helix in k-turn"},{"Cstem_pair":"Cstem bp delineating the k-turn internal loop"},{"Dp":"perpendicular distance of the 3' P atom to the glycosidic bond"},{"GA_pair":"sheared G-A pair in k-turn"},{"HtypePknot":"H-type pseudoknot"},{"Kturn":"kink-turn (k-turn)"},{"LW":"Leontis-Westhof"},{"NCstem_index":"stem index of the 'Non-Canonical' helix in k-turn"},{"NCstem_pair":"NCstem bp delineating the k-turn internal loop"},{"Uturn":"U-turn of the UNR- or GNRA-type"},{"aa":"amino acid"},{"atom_pair":"symbols of the two atoms involved in an H-bond"},{"auxfiles":"auxiliary files"},{"glyco_bond":"conformation of base related to sugar (syn or anti)"},{"bb_type":"backbone conformation, BI or BII"},{"bending_angle":"angle between two helical axes"},{"bp":"base pair"},{"bseq":"base sequence in one-letter code"},{"bulge":"bulge loop"},{"coaxStacks":"coaxial stacking of stems within a helix"},{"dbn":"dot bracket notation"},{"desc":"description"},{"donAcc_type":"donor/acceptor type of the atom pair in an H-bond"},{"epsilon_zeta":"difference between epsilon and zeta torsion angles"},{"hairpin":"hairpin loop"},{"hbond":"hydrogen bond (H-bond)"},{"helix":"defined by base-stacking interactions, regardless of bp type and backbone connectivity"},{"id":"identifier"},{"iloop":"internal loop"},{"index":"serial number"},{"isoCanonPairs":"isolated canonical pairs"},{"junction":"(multi-branched) junction loop"},{"kissingLoop":"kissing loop"},{"multiplet":"3+ bases in a coplanar geometry"},{"na":"nucleic acid"},{"nonPair":"two nts not forming a pair, but with H-bonding/stacking interactions"},{"nonStack":"nucleotide not involved in stacking interactions"},{"nt":"nucleotide"},{"num":"number"},{"oArea":"overlap areas between two bases, including exocyclic atoms"},{"oArea_ring":"overlap areas between two bases, including only ring atoms"},{"phosContacts":"H-bonding and atom-capping interactions involving a phosphate"},{"residue_pair":"types of the two residues involved in an H-bond"},{"rmsd":"root-mean-squares deviation"},{"serNum":"serial number"},{"ssSegments":"single-stranded segments not involved in loops"},{"ssZp":"Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane"},{"sstr":"secondary structure in dbn"},{"stem":"helix consisting of only canonical pairs, with a continuous backbone"},{"str_id":"structure identifier, derived from inpfile with extension removed"},{"vert_dist":"vertical distance from an atom to a base plane"}],"start_at":"Fri May 10 23:08:33 2024","finish_at":"Fri May 10 23:08:33 2024","time_used":"00:00:00:00"}}